PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024298-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 454aa    MW: 49831.7 Da    PI: 5.736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024298-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07373413954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  NNU_024298-RA 373 ARHRRERISERIRVLQRLVPGG-----TKMDTATMLDEAANYLKFL 413
                    599*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-11370422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-13370423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-5374413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-4386418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDCLGWDEPS IWSNEVQHEL AQGSIASNTT INYGILSGKV DLYEGVFQRT RMSGIGSNSE  60
GVNEMAQQLV PTLDSINVVS DLNLLQRQEA IRLADAALLA KSGTGSAAWG EAPTTAELCS  120
NHVINRPCSI NPLSDLMAEL GAVDRLRVKD GRAGVSDTGS LESFDCLLSA TNSNTDTSME  180
DDDISMILSD CRNLWNFNSG GAVSSGESEN NGSNGSNKDM CWRFNNELDE AVSRGSSNPF  240
VNHGRPSDVG PNSNKRSKVE QQLKVMRPNN HHYFDLLQSD SSTTDGGFRL IPENQPKPKK  300
PRSEKQRSSN INFQQSNSSF SSADELDAEA IAQMKEMIYR AAVFRPVNLG LEVVEKPKRK  360
NVRISSDPQT VAARHRRERI SERIRVLQRL VPGGTKMDTA TMLDEAANYL KFLRSQVKAL  420
ETLGHKADSV NCSSTNLPPN LPFPMQTIFP LPKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244365.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D23e-86BH087_ARATH; Transcription factor bHLH87
TrEMBLF6HY461e-159F6HY46_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g02700.t011e-159(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-58bHLH family protein